[Pombelist] ORFeome images/update

Valerie Wood val at sanger.ac.uk
Mon Feb 16 11:39:49 GMT 2009


Juan Mata has provided a revised version of the spreadsheet with hyperlinks.
I replaced the file on the ftp site with the new file called orfeome_with_links.xls

The mappings from the individual gene pages will be in place shortly.

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Hello,

I will be making mappings from the individual gene pages to the Riken 
pages. This isn't as  easy  as usual because I need to do a conversion 
between our IDs and the Riken IDs and it isn't straightforward with our 
current system. However  I didn't reilize that these were no longer 
accessible except by browsing, so I have upped the priority.

In the meantime, I have put the mapping file in the ftp directory
follow the link ftp site from the top of this page
http://www.sanger.ac.uk/Projects/S_pombe/download.shtml
file orfeome.xls
 From this you can use  the pombe systemtic ID to identify the riken ID
If the riken gene ID is 40/D03, its URL is 
http://www.riken.jp/SPD/40/40D03.html

VAl




>/
/>/ Hi Everyone,
/>/
/>/ Does anyone know how to access images from the genome-wide orfeome tag 
/>/ (YFP) collection?  I used to be able to access it from the Riken 
/>/ website (http://www.riken.jp/SPD/index.html), but the webpage now says 
/>/ they will be moving the image collection to GeneDB and I don't think 
/>/ it's on that site yet.  Anyone know how to access and search through 
/>/ the image collection in the meantime?  Thanks for any help you can 
/>/ provide!
/>/
/>/ Best wishes,
/>/ Neal
/>/
/>/ --------------------------------------------------------------------
/>/
/>/ Neal N. Padte
/>/ Ph.D. Candidate
/>/ Laboratory of Fred Chang
/>/ Integrated Program in Cellular, Molecular, and Biophysical Studies
/>/ Columbia University Medical Center
/>/ 701 W. 168th St., Room 1404
/>/ New York, NY 10032
/>/ Phone:       212-305-3930
/>/ Fax:         212-342-1748
/>/ E-mail:      nnp2103 at columbia.edu <http://lists.sanger.ac.uk/mailman/listinfo/pombelist>
/>/ Lab Website: http://microbiology.columbia.edu/fredchang
/>/
/>/
/>/
/>

-- 
---------------------------------------------------------------------------
Valerie Wood			 
S. pombe Genome Project		  		       
email: val at sanger.ac.uk val at ebi.ac.uk
http://www.genedb.org/genedb/pombe 
http://www.sanger.ac.uk/Projects/S_pombe





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